notes
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systems biology
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approximate bayesian computation
approximate bayesian computation scheme for parameter inference and model selection in dynamical systems by Tina Toni, Michael P. H. Stumpf et al in 2009
Statistical physics approaches to subnetwork dynamics in biochemical systems by Bravi and Sollich in 2017
Predicting Evolutionary Constraints by Identifying Conflicting Demands in Regulatory Networks by Manjunatha Kogenaru, Frank Poelwijk, Sander Tans et al in 2020
Optimal transport Analysis of Single-Cell Gene Expression Identifies Developmental Trajectories in Reprogramming by Geoffrey Schiebinger, Aviv Regev, Eric Lander, et al in 2019
Michael P. H. Stumpf
In what sense can gene-regulatory networks be thought of as performing inference upon the dynamics of the environments within which they are embedded?
From computation to life The challenge of a science of organization by Walter Fontana in 2020
Fibration symmetries uncover the building blocks of biological networks by Flaviano Morone and Hernan Makse in 2020
Circuits with broken fibration symmetries perform core logic computations in biological networks by Ian Leifer, Flaviano Morone, and Hernan Makse in 2020
Becoming as inference
An Introduction to Systems Biology by Uri Alon in 2020