notes

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index

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phylogenetics

Frequentist:

☐ Examine data sets from REVOLVER @est(2h) @today

Bayesian:

Collaborative intra-tumor heterogeneity detection. Khakabimamaghani, S., Malikic, S., (2019). Bioinformatics, 35(14), i379–i388. https://doi.org/10.1093/bioinformatics/btz355 -* see summary of methods so far in Notes section

Phylogenetic inference using RevBayes by Hohna, Landis, and Heath in 2017

Evaluating probabilistic programming and fast variational Bayesian inference in phylogenetics by Mathieu Fourment and Aaron Darling in 2019