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Bayesian probabilistic inference for stochastic processes

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examples that connect individual-level stochastic processes to Bayesian hierarchical models

Parise, F., Lygeros, J., & Ruess, J. (2015). Bayesian inference for stochastic individual-based models of ecological systems: a pest control simulation study. Frontiers in Environmental Science, 3(JUN), 42. https://doi.org/10.3389/fenvs.2015.00042

Stollenwerk, N., Mateus, L., Rocha, F., Skwara, U., Ghaffari, P., & Aguiar, M. (2015). Prediction and Predictability in Population Biology: Noise and Chaos. Mathematical Modelling of Natural Phenomena, 10(2), 142–164. https://doi.org/10.1051/mmnp/201510210 Mateus, L., Stollenwerk, N., & Zambrini, J.-C. (2013). Stochastic models in population biology: from dynamic noise to Bayesian description and model comparison for given data sets. International Journal of Computer Mathematics, 90(10), 2161–2173. https://doi.org/10.1080/00207160.2013.792924

Population biology and criticality by Nico Stollenwerk and Vincent Johnson in 2010

Inferring gene regulatory networks from single-cell data a mechanistic approach by Ulysse Herbach, Olivier Gandrillon, et al in 2017